Cotton functional genomic database

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August undefined, 2024

WebBACKGROUND: Cotton (Gossypium spp.) is the most important fiber and oil crop in the world. With the emergence of huge -omics data sets, it is essential to have an integrated … WebMar 14, 2024 · Growth-regulating factors-interacting factors (GIFs) are a type of transcription co-activators in plants, playing crucial roles in plants’ growth, development, and stress adaptation. Here, a total of 35 GIF genes were identified and clustered into two groups by phylogenetic analysis in four cotton genus. The gene structure and conserved domain …

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WebHere, we describe the method of an Agrobacterium infiltration-based virus-induced gene silencing (VIGS) assay to transiently silence endogenous genes in cotton at 2-week-old … WebAug 1, 2024 · Cotton is the primary source of natural textile worldwide. Fiber development is one of the mostly investigated biological processes in cotton functional genomics. Cotton fiber originates from the ovule epidermis and develops into a long trichome (Qin and Zhu 2011). Fiber development can be categorized into four stages based on the morphology ... how to keep insulation in ceiling

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WebCottongen 1 is a comprehensively cotton database that integrated extensive data, including genomes, genetic maps, molecular markers, and phenotypes ( Yu et al., 2014 ). ccNET 2 … WebHere, we set up a comprehensive cotton genomic variation database (CottonGVD). For cotton, several cotton databases have been released previously. Cottongen 1 is a comprehensively cotton database that integrated extensive data, including genomes, genetic maps, molecular markers, and phenotypes ( Yu et al., 2014 ). ccNET 2 provides … WebJun 8, 2024 · Background: Cotton (Gossypium spp.) is the most important fiber and oil crop in the world. With the emergence of huge -omics data sets, it is essential to have an … joseph bullaro citizens bank

CottonFGD: an integrated functional genomics database …

[PDF] Genome-Wide Functional Analysis of the Cotton …

WebApr 13, 2024 · Plant materials. The NCC brown cotton Zongxu1 (Gossypium hirsutum L., ZX1) seeds were preserved at the Key Laboratory for Plant Genome and Colored Fiber Molecular Improvement, Zhejiang Sci-Tech University, Hangzhou, China.The ZX1 were planted in the experimental field (Xiasha campus, Zhejiang Sci-Tech University). The … WebJun 8, 2024 · Cotton ( Gossypium spp.) is the most important fiber and oil crop in the world. With the emergence of huge -omics data sets, it is essential to have an integrated functional genomics database that allows worldwide users to quickly and easily fetch and visualize genomic information. Currently available cotton-related databases have some … how to keep instant coffee freshWebMay 16, 2015 · CottonGen is an integration and update of publicly available cotton data from CottonDB, CMD and TropGene-DB. However, the databases mentioned above emphasize genomic, genetic, taxonomic and marker data, providing limited information on key functional genes and the relationships between them. how to keep insulation from falling down

"WebDec 18, 2024 · The first public documentation of CottonGen occurred in 2014, when the database amalgamated and superseded the cotton genome database (CottonDB) [3,4], established in 1995, and the cotton marker database (CMD) , established in 2003. CottonGen was expanded to include annotated genome and transcriptome sequences … " - Cotton functional genomic database

Cotton functional genomic database

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WebOct 10, 2024 · CottonMD is a multi-omics database which integrates genome, transcriptome, genetic variation, phenotype, epigenome and metabolite datasets and … WebJan 21, 2024 · CottonFGD ( Zhu et al., 2024) is a cotton functional genome database, which integrates cotton genomes and transcriptomes as well as sequence retrieval, …

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WebDec 18, 2024 · The first public documentation of CottonGen occurred in 2014, when the database amalgamated and superseded the cotton genome database (CottonDB) … WebFunctional genomics has transformed from futuristic concept to well-established scientific discipline during the last decade. Cotton functional genomics promise to enhance the …

WebJan 27, 2024 · BACKGROUND: Cotton (Gossypium spp.) is the most important fiber and oil crop in the world. With the emergence of huge -omics data sets, it is essential to have an … WebJun 8, 2024 · Background Cotton (Gossypium spp.) is the most important fiber and oil crop in the world. With the emergence of huge -omics data sets, it is essential to have an …

WebBACKGROUND: Cotton (Gossypium spp.) is the most important fiber and oil crop in the world. With the emergence of huge -omics data sets, it is essential to have an integrated … WebJun 8, 2024 · Cotton ( Gossypium spp.) is the most important fiber and oil crop in the world. With the emergence of huge -omics data sets, it is essential to have an integrated …

WebNov 6, 2013 · The availability of the cotton genome sequence provides a major source of candidate genes with potential for the genetic improvement of cotton quality and productivity. ... Results of in silico functional annotations of Gene Ontology (GO) terms and functional classification by pathways from KEGG are also recorded in the database. …

WebSep 12, 2024 · The unequal distribution of genes on the cotton genome's chromosomes could be because of gene repetition or a partial segment of gene duplication that happened during the plant's long evolutionary history. ... Cotton Functional Genomic Database. WT: Wildtype. LSD: Least Significant Difference. SOD: Superoxide dismutase. POD: … how to keep instant replay onWebWe identified 151 and 4,214 EST-simple sequence repeats (SSRs) from contigs and raw ESTs respectively. To make these data widely available, and to facilitate access to EST-related genetic information, we integrated our results into a comprehensive, fully downloadable web-based cotton EST database (www.leonxie.com). how to keep insulin levels steadyWebCotton Functional Genomics Database (CottonFGD) integrates with modern genomic/transcriptomic data and earch/analysis/visualization modules. It aims at … how to keep interior doors from closingWebNov 8, 2011 · The results are integrated into a comprehensive, fully downloadable web-based cotton EST database (www.leonxie.com), which predicted 3,260 genes as miRNAs targets, which are associated with multiple biological functions, including stress response, metabolism, hormone signal transduction and fiber development. A total of 28,432 … how to keep insured weapon dmzWebCotton functional genomics promise to enhance the understanding of fundamental plant biology to systematically exploit genetic resources for the improvement of cotton fibre quality and yield, as well as utilization of genetic information for germplasm improvement. joseph bullock obituaryWebSep 12, 2024 · Background Cotton (Gossypium spp.) is the most important fiber and oil crop in the world. With the emergence of huge -omics data sets, it is essential to have an … joseph bullock florida highway patrolWebOct 5, 2024 · Gossypium spp. (Cotton) is the world’s most valuable natural fiber crop. Gossypium species’ variety makes them a good model for studying polyploid evolution and domestication. The past decade has seen a dramatic shift in the field of functional genomics from a theoretical idea to a well-established scientific discipline. Cotton … how to keep internet connection in sleep mode